A genome-wide and nonredundant mouse transcription factor database

Mutsumi Kanamori; Hideaki Konno; Naoki Osato; Jun Kawai; Yoshihide Hayashizaki; Harukazu Suzuki

doi:10.1016/j.bbrc.2004.07.179

A genome-wide and nonredundant mouse transcription factor database

Mutsumi Kanamori, Hideaki Konno, Naoki Osato, Jun Kawai, Yoshihide Hayashizaki, Harukazu Suzuki

Research output: Contribution to journal › Article › peer-review

97 Citations (Scopus)

Abstract

Here we describe the development of a genome-wide and nonredundant mouse transcription factor database and its viewer (http://genome.gsc.riken.jp/TFdb/). We systematically selected transcription factors with DNA-binding properties and their regulators on the basis of their LocusLink and Gene Ontology annotations. We also incorporated into our database information regarding the corresponding available cDNA clones and their structural properties. Because of these features, our database is unique and may provide useful information for systematic genome-wide studies of transcriptional regulation.

Original language	English
Pages (from-to)	787-793
Number of pages	7
Journal	Biochemical and Biophysical Research Communications
Volume	322
Issue number	3
DOIs	https://doi.org/10.1016/j.bbrc.2004.07.179
Publication status	Published - 2004 Sept 24
Externally published	Yes

Keywords

Annotation
Database
Gene Ontology
LocusLink
Mouse
Transcription factor
cDNA clones

ASJC Scopus subject areas

Biophysics
Biochemistry
Molecular Biology
Cell Biology

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10.1016/j.bbrc.2004.07.179

Cite this

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abstract = "Here we describe the development of a genome-wide and nonredundant mouse transcription factor database and its viewer (http://genome.gsc.riken.jp/TFdb/). We systematically selected transcription factors with DNA-binding properties and their regulators on the basis of their LocusLink and Gene Ontology annotations. We also incorporated into our database information regarding the corresponding available cDNA clones and their structural properties. Because of these features, our database is unique and may provide useful information for systematic genome-wide studies of transcriptional regulation.",

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author = "Mutsumi Kanamori and Hideaki Konno and Naoki Osato and Jun Kawai and Yoshihide Hayashizaki and Harukazu Suzuki",

note = "Funding Information: We thank all the members of the Laboratory for Genome Exploration Research Group (GSC) and the Genome Science Laboratory of RIKEN. This study was supported by a Research Grant for the RIKEN Genome Exploration Research Project from the Ministry of Education, Culture, Sports, Science and Technology of the Japanese Government (to Y.H.), a Research Grant for Advanced and Innovational Research Program in Life Science (to Y.H.), a Research Grant for Advanced and Innovational Research Program in Life Science (to J.K.), and CREST (Core Research for Evolutional Science and Technology) of the Japan Science and Technology Corporation (JST) (to Y.H.). ",

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doi = "10.1016/j.bbrc.2004.07.179",

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AU - Kanamori, Mutsumi

AU - Konno, Hideaki

AU - Osato, Naoki

AU - Kawai, Jun

AU - Hayashizaki, Yoshihide

AU - Suzuki, Harukazu

N1 - Funding Information: We thank all the members of the Laboratory for Genome Exploration Research Group (GSC) and the Genome Science Laboratory of RIKEN. This study was supported by a Research Grant for the RIKEN Genome Exploration Research Project from the Ministry of Education, Culture, Sports, Science and Technology of the Japanese Government (to Y.H.), a Research Grant for Advanced and Innovational Research Program in Life Science (to Y.H.), a Research Grant for Advanced and Innovational Research Program in Life Science (to J.K.), and CREST (Core Research for Evolutional Science and Technology) of the Japan Science and Technology Corporation (JST) (to Y.H.).

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KW - Annotation

KW - Database

KW - Gene Ontology

KW - LocusLink

KW - Mouse

KW - Transcription factor

KW - cDNA clones

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A genome-wide and nonredundant mouse transcription factor database

Abstract

Keywords

ASJC Scopus subject areas

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