TY - JOUR
T1 - Chloride Ions Stabilize Human Adult Hemoglobin in the T-State, Competing with Allosteric Interaction of Oxygen Molecules
AU - Kurisaki, Ikuo
AU - Takahashi, Yume
AU - Kitamura, Yukichi
AU - Nagaoka, Masataka
N1 - Funding Information:
This work was supported by the Core Research for Evolutional Science and Technology (CREST) of the Japan Science and Technology Agency (JST) by Bilateral Joint Research Projects “Joint Research Project of Molecular Technology Reinforced with Data Scientific Approaches: Clarifying Functions of Complex Biomolecular Systems” from the Japan Society for the Promotion of Science (JSPS), by a Grant-in-Aid for Scientific Research (B) “Combinational Research of Computational Chemistry and Data Science of pH-Dependent Environment, From Molecular Aggregation to Biomolecular Function” from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) in Japan, and also by a Fugaku Preliminary Use Projects (Start-up Preparation Project: “Computational Chemistry Research for Designing High-Performance Polymers with the Reaction Mechanism Optimization”) from the Research Organization for Information Science and Technology (RIST). The calculations were partially performed using several computing systems at the Information Technology Center at Nagoya University, and also at the Research Center for Computational Science at the Institute for Molecular Science, Okazaki, Japan.
Publisher Copyright:
© 2021 American Chemical Society.
PY - 2021/11/25
Y1 - 2021/11/25
N2 - In the context of a molecular-level understanding of the allostery mechanisms, human adult hemoglobin (HbA) has been extensively studied for over half a century. Chloride ions (Cl-) have been known as one of HbA allosteric effectors, which stabilizes the T-state preferable to release oxygen molecules. The functional mechanisms were individually proposed by Ueno and Perutz several decades ago. Ueno considered that the site-specific Cl- binding is essential, while Perutz proposed the non-site-specific interaction between HbA and Cl-. Each speculation explains the mechanism plausibly since each was tightly associated with its reasonable experimental observation. However, both mechanisms themselves still seem to make their speculations controversial. In the present study, we have theoretically reconsidered these apart from their approaches. Our atomistic molecular dynamics simulations then showed that the increase of Cl- concentration suppresses the conformational conversion from the T-state. Interestingly, chloride ions loosely interact with the amino acid residues inside the HbA central cavity, suggesting that both Perutz's and Ueno's speculations are involved in understanding the microscopic roles of Cl-. In conclusion, we theoretically certified that the effect of Cl- competes against that of solvated O2, i.e., the destabilization of T-state through the non-site-specific interaction, implying the concerted regulation of HbA under physiological conditions.
AB - In the context of a molecular-level understanding of the allostery mechanisms, human adult hemoglobin (HbA) has been extensively studied for over half a century. Chloride ions (Cl-) have been known as one of HbA allosteric effectors, which stabilizes the T-state preferable to release oxygen molecules. The functional mechanisms were individually proposed by Ueno and Perutz several decades ago. Ueno considered that the site-specific Cl- binding is essential, while Perutz proposed the non-site-specific interaction between HbA and Cl-. Each speculation explains the mechanism plausibly since each was tightly associated with its reasonable experimental observation. However, both mechanisms themselves still seem to make their speculations controversial. In the present study, we have theoretically reconsidered these apart from their approaches. Our atomistic molecular dynamics simulations then showed that the increase of Cl- concentration suppresses the conformational conversion from the T-state. Interestingly, chloride ions loosely interact with the amino acid residues inside the HbA central cavity, suggesting that both Perutz's and Ueno's speculations are involved in understanding the microscopic roles of Cl-. In conclusion, we theoretically certified that the effect of Cl- competes against that of solvated O2, i.e., the destabilization of T-state through the non-site-specific interaction, implying the concerted regulation of HbA under physiological conditions.
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U2 - 10.1021/acs.jpcb.1c07520
DO - 10.1021/acs.jpcb.1c07520
M3 - Article
C2 - 34756042
AN - SCOPUS:85119442796
SN - 1520-6106
VL - 125
SP - 12670
EP - 12677
JO - Journal of Physical Chemistry B
JF - Journal of Physical Chemistry B
IS - 46
ER -