Abstract
Analyzing the basic mechanism of DNA double-strand breaks (DSB) formation during meiosis is important for understanding sexual reproduction and genetic diversity. The location and amount of meiotic DSBs can be examined by using a common molecular biological technique called Southern blotting, but only a subset of the total DSBs can be observed; only DSB fragments still carrying the region recognized by a Southern blot probe are detected. With the assumption that DSB formation follows a nonhomogeneous Poisson process, we propose two estimators of the total number of DSBs on a chromosome: (1) an estimator based on the Nelson-Aalen estimator, and (2) an estimator based on a record value process. Further, we compared their asymptotic accuracy.
Original language | English |
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Pages (from-to) | 1277-1283 |
Number of pages | 7 |
Journal | Journal of Computational Biology |
Volume | 19 |
Issue number | 12 |
DOIs | |
Publication status | Published - 2012 Dec 1 |
Keywords
- Double-strand breaks
- Nelson-Aalen estimator
- nonhomogeneous Poisson process
- record value process southern blotting
ASJC Scopus subject areas
- Modelling and Simulation
- Molecular Biology
- Genetics
- Computational Mathematics
- Computational Theory and Mathematics