Estimation of neural connections from partially observed neural spikes

Taishi Iwasaki*, Hideitsu Hino, Masami Tatsuno, Shotaro Akaho, Noboru Murata

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

2 Citations (Scopus)


Plasticity is one of the most important properties of the nervous system, which enables animals to adjust their behavior to the ever-changing external environment. Changes in synaptic efficacy between neurons constitute one of the major mechanisms of plasticity. Therefore, estimation of neural connections is crucial for investigating information processing in the brain. Although many analysis methods have been proposed for this purpose, most of them suffer from one or all the following mathematical difficulties: (1) only partially observed neural activity is available; (2) correlations can include both direct and indirect pseudo-interactions; and (3) biological evidence that a neuron typically has only one type of connection (excitatory or inhibitory) should be considered. To overcome these difficulties, a novel probabilistic framework for estimating neural connections from partially observed spikes is proposed in this paper. First, based on the property of a sum of random variables, the proposed method estimates the influence of unobserved neurons on observed neurons and extracts only the correlations among observed neurons. Second, the relationship between pseudo-correlations and target connections is modeled by neural propagation in a multiplicative manner. Third, a novel information-theoretic framework is proposed for estimating neuron types. The proposed method was validated using spike data generated by artificial neural networks. In addition, it was applied to multi-unit data recorded from the CA1 area of a rat's hippocampus. The results confirmed that our estimates are consistent with previous reports. These findings indicate that the proposed method is useful for extracting crucial interactions in neural signals as well as in other multi-probed point process data.

Original languageEnglish
Pages (from-to)172-191
Number of pages20
JournalNeural Networks
Publication statusPublished - 2018 Dec


  • Effective connectivity
  • Graph
  • Partial observation
  • Spike data

ASJC Scopus subject areas

  • Cognitive Neuroscience
  • Artificial Intelligence


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