TY - JOUR
T1 - Protein Data Bank Japan
T2 - Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data
AU - Bekker, Gert Jan
AU - Yokochi, Masashi
AU - Suzuki, Hirofumi
AU - Ikegawa, Yasuyo
AU - Iwata, Takeshi
AU - Kudou, Takahiro
AU - Yura, Kei
AU - Fujiwara, Toshimichi
AU - Kawabata, Takeshi
AU - Kurisu, Genji
N1 - Funding Information:
National Bioscience Database Center‐Japan Science and Technology Agency; Basis for Supporting Innovative Drug Discovery and Life Science Research [BINDS]‐Japan Agency for Medical Research and Development, Grant/Award Number: JP21am0101066; Ministory of Education, Culture, Sports, Science and Technology‐Japan Funding information
Funding Information:
This work was supported by grants from the Database Integration Coordination Program from the National Bioscience Database Center (NBDC)‐JST (Japan Science and Technology Agency), partially supported by Platform Project for Supporting Drug Discovery and Life Science Research (Basis for Supporting Innovative Drug Discovery and Life Science Research [BINDS]) from AMED (Japan Agency for Medical Research and Development) under Grant Number JP21am0101066, and Joint Usage/Research Center project from the Ministry of Education, Culture, Sports, Science and Technology‐Japan.
Publisher Copyright:
© 2021 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society.
PY - 2022/1
Y1 - 2022/1
N2 - Protein Data Bank Japan (PDBj), a founding member of the worldwide Protein Data Bank (wwPDB) has accepted, processed and distributed experimentally determined biological macromolecular structures for 20 years. During that time, we have continuously made major improvements to our query search interface of PDBj Mine 2, the BMRBj web interface, and EM Navigator for PDB/BMRB/EMDB entries. PDBj also serves PDB-related secondary database data, original web-based modeling services such as Homology modeling of complex structure (HOMCOS), visualization services and utility tools, which we have continuously enhanced and expanded throughout the years. In addition, we have recently developed several unique archives, BSM-Arc for computational structure models, and XRDa for raw X-ray diffraction images, both of which promote open science in the structural biology community. During the COVID-19 pandemic, PDBj has also started to provide feature pages for COVID-19 related entries across all available archives at PDBj from raw experimental data and PDB structural data to computationally predicted models, while also providing COVID-19 outreach content for high school students and teachers.
AB - Protein Data Bank Japan (PDBj), a founding member of the worldwide Protein Data Bank (wwPDB) has accepted, processed and distributed experimentally determined biological macromolecular structures for 20 years. During that time, we have continuously made major improvements to our query search interface of PDBj Mine 2, the BMRBj web interface, and EM Navigator for PDB/BMRB/EMDB entries. PDBj also serves PDB-related secondary database data, original web-based modeling services such as Homology modeling of complex structure (HOMCOS), visualization services and utility tools, which we have continuously enhanced and expanded throughout the years. In addition, we have recently developed several unique archives, BSM-Arc for computational structure models, and XRDa for raw X-ray diffraction images, both of which promote open science in the structural biology community. During the COVID-19 pandemic, PDBj has also started to provide feature pages for COVID-19 related entries across all available archives at PDBj from raw experimental data and PDB structural data to computationally predicted models, while also providing COVID-19 outreach content for high school students and teachers.
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U2 - 10.1002/pro.4211
DO - 10.1002/pro.4211
M3 - Article
C2 - 34664328
AN - SCOPUS:85118219015
SN - 0961-8368
VL - 31
SP - 173
EP - 186
JO - Protein Science
JF - Protein Science
IS - 1
ER -