TY - JOUR
T1 - On the properties of language classes defined by bounded reaction automata
AU - Okubo, Fumiya
AU - Kobayashi, Satoshi
AU - Yokomori, Takashi
N1 - Funding Information:
The authors gratefully acknowledge useful remarks and comments by anonymous referees which improved an earlier version of this paper. The work of F. Okubo was possible due to Waseda University Grant for Special Research Projects: 2011A-842. The work of S. Kobayashi was in part supported by Grants-in-Aid for Scientific Research (C) No. 22500010, Japanese Society for the Promotion of Science. The work of T. Yokomori was in part supported by a Waseda University Grant for Special Research Projects: 2011B-056.
PY - 2012/10/5
Y1 - 2012/10/5
N2 - Reaction automata are a formal model that has been introduced to investigate the computing powers of interactive behaviors of biochemical reactions (Okubo et al. (2012) [19]). Reaction automata are language acceptors with multiset rewriting mechanism whose basic frameworks are based on reaction systems introduced in Ehrenfeucht and Rozenberg (2007) [8]. In this paper we continue the investigation of reaction automata with a focus on the formal language theoretic properties of subclasses of reaction automata, called linear-bounded reaction automata (LRAs) and exponentially-bounded reaction automata (ERAs). Besides LRAs, we newly introduce an extended model (denoted by λ-LRAs) by allowing λ-moves in the accepting process of reaction, and investigate the closure properties of language classes accepted by both LRAs and λ-LRAs. Further, we establish new relationships of language classes accepted by LRAs and by ERAs with the Chomsky hierarchy. The main results include the following: the class of languages accepted by λ-LRAs forms an AFL with additional closure properties,any recursively enumerable language can be expressed as a homomorphic image of a language accepted by an LRA,the class of languages accepted by ERAs coincides with the class of context-sensitive languages.
AB - Reaction automata are a formal model that has been introduced to investigate the computing powers of interactive behaviors of biochemical reactions (Okubo et al. (2012) [19]). Reaction automata are language acceptors with multiset rewriting mechanism whose basic frameworks are based on reaction systems introduced in Ehrenfeucht and Rozenberg (2007) [8]. In this paper we continue the investigation of reaction automata with a focus on the formal language theoretic properties of subclasses of reaction automata, called linear-bounded reaction automata (LRAs) and exponentially-bounded reaction automata (ERAs). Besides LRAs, we newly introduce an extended model (denoted by λ-LRAs) by allowing λ-moves in the accepting process of reaction, and investigate the closure properties of language classes accepted by both LRAs and λ-LRAs. Further, we establish new relationships of language classes accepted by LRAs and by ERAs with the Chomsky hierarchy. The main results include the following: the class of languages accepted by λ-LRAs forms an AFL with additional closure properties,any recursively enumerable language can be expressed as a homomorphic image of a language accepted by an LRA,the class of languages accepted by ERAs coincides with the class of context-sensitive languages.
KW - Abstract family of languages
KW - Biochemical reaction model
KW - Bounded reaction automata
KW - Closure property
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U2 - 10.1016/j.tcs.2012.03.024
DO - 10.1016/j.tcs.2012.03.024
M3 - Article
AN - SCOPUS:84866014018
SN - 0304-3975
VL - 454
SP - 206
EP - 221
JO - Theoretical Computer Science
JF - Theoretical Computer Science
ER -